# cmsearch :: search CM(s) against a sequence database
# INFERNAL 1.1.4 (Dec 2020)
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query CM file:                         RF00001.cm
# target sequence database:              GCA_000146045.2.fasta
# show alignments in output:             no
# sequence reporting threshold:          score >= 46
# number of worker threads:              56
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       5S_rRNA  [CLEN=119]
Accession:   RF00001
Description: 5S ribosomal RNA
Hit scores:
 rank     E-value  score  bias  sequence                 start    end   mdl trunc   gc  description
 ----   --------- ------ -----  ----------------------- ------ ------   --- ----- ----  -----------
  (1) !   1.6e-18   88.8   0.0  ENA|BK006945|BK006945.2 459676 459796 +  cm    no 0.52  TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
  (2) !   1.6e-18   88.8   0.0  ENA|BK006945|BK006945.2 489349 489469 +  cm    no 0.52  TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
  (3) !   4.4e-17   83.2   0.0  ENA|BK006945|BK006945.2 468813 468933 +  cm    no 0.53  TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
  (4) !   4.4e-17   83.2   0.0  ENA|BK006945|BK006945.2 472465 472585 +  cm    no 0.53  TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
  (5) !   4.4e-17   83.2   0.0  ENA|BK006945|BK006945.2 482045 482165 +  cm    no 0.53  TPA_inf: Saccharomyces cerevisiae S288C chromosome XII
  (6) !   4.4e-17   83.2   0.0  ENA|BK006945|BK006945.2 485697 485817 +  cm    no 0.53  TPA_inf: Saccharomyces cerevisiae S288C chromosome XII


Internal CM pipeline statistics summary:
----------------------------------------
Query model(s):                                                  1  (119 consensus positions)
Target sequences:                                               16  (24142652 residues searched)
Target sequences re-searched for truncated hits:                16  (12416 residues re-searched)
Windows   passing  local HMM SSV           filter:           24991  (0.2423); expected (0.35)
Windows   passing  local HMM Viterbi       filter:            8464  (0.08504); expected (0.15)
Windows   passing  local HMM Viterbi  bias filter:            8432  (0.08473); expected (0.15)
Windows   passing  local HMM Forward       filter:             135  (0.001502); expected (0.003)
Windows   passing  local HMM Forward  bias filter:             134  (0.001493); expected (0.003)
Windows   passing glocal HMM Forward       filter:              65  (0.0007404); expected (0.003)
Windows   passing glocal HMM Forward  bias filter:              65  (0.0007404); expected (0.003)
Envelopes passing glocal HMM envelope defn filter:              61  (0.0003446); expected (0.003)
Envelopes passing  local CM  CYK           filter:              15  (6.52e-05); expected (0.0001)
Total CM hits reported:                                          6  (3.006e-05); includes 0 truncated hit(s)

# CPU time: 3.95u 0.28s 00:00:04.23 Elapsed: 00:00:00.36
//
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