6 #include "primer_bed.h"     8 int get_primer_indice(std::vector<primer> p, 
unsigned int pos){
     9   for(std::vector<primer>::iterator it = p.begin(); it != p.end(); ++it) {
    10     if(it->get_start() <= pos && it->get_end() >= pos){
    11       return it - p.begin();
    17 int get_primers_with_mismatches(std::string bed, std::string vpath){
    18   std::vector<primer> primers = populate_from_file(bed);
    19   std::vector<unsigned int> indices;
    20   std::string line, cell;
    21   std::ifstream fin(vpath);
    22   unsigned int ctr, pos;
    24   std::stringstream  line_stream;
    25   while (std::getline(fin, line)){
    29     while(std::getline(line_stream,cell,
'\t')){
    44     ind = get_primer_indice(primers, pos);
    45     if(std::find(indices.begin(), indices.end(), ind) == indices.end() && ind != -1){
    46       indices.push_back(ind);
    50   for(std::vector<unsigned int>::iterator it = indices.begin(); it != indices.end(); ++it) {
    52     if(it != indices.end() - 1)
    55   std::cout << std::endl;