Here is a list of all documented files with brief descriptions:
[detail level 12]
| ▼ src |  | 
| alignment.h |  | 
| allele_functions.h |  | 
| call_consensus_pileup.h |  | 
| call_variants.h |  | 
| get_masked_amplicons.h |  | 
| ivar.cpp |  | 
| primer_bed.h |  | 
| remove_reads_from_amplicon.h |  | 
| suffix_tree.h |  | 
| trim_primer_quality.h |  |