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| binnest | Binary Random Effects Model with Two Levels of Nesting |
| biv.betab | Bivariate Beta-binomial Regression |
| biv.binom | Marginal Bivariate Binomial Regression |
| capture | Capture-recapture Model |
| catmiss | Marginal probabilities for categorical repeated measures with missing data |
| chidden | Continuous-Time Hidden Markov Chain Models |
| coefficients.gar | Generalized autoregression |
| coefficients.nbkal | Negative Binomial Model with Kalman Update |
| deviance.gar | Generalized autoregression |
| deviance.nbkal | Negative Binomial Model with Kalman Update |
| fitted.gar | Generalized autoregression |
| fitted.nbkal | Negative Binomial Model with Kalman Update |
| gar | Generalized autoregression |
| glmm | Generalized Linear Mixed Models |
| gnlmm | Fit a Generalized Nonlinear Mixed Model |
| hidden | Hidden Markov Chain Models |
| kalcount | Repeated Measurements Models for Counts in the Presence of Time-varying Covariates and with Frailty or Serial Dependence |
| kalseries | Repeated Measurements Models for Continuous Variables in the Presence of Time-varying Covariates and with Frailty or Serial Dependence |
| logitord | Ordinal Random Effects Models with Dropouts |
| marg.hom | Marginal Homogeneity Model |
| nbkal | Negative Binomial Model with Kalman Update |
| print.gar | Generalized autoregression |
| print.nbkal | Negative Binomial Model with Kalman Update |
| repeated | Non-normal Repeated Measurements Library |
| residuals.gar | Generalized autoregression |
| residuals.nbkal | Negative Binomial Model with Kalman Update |